Information for 7-CGTGCAGAGA (Motif 16)

G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A
Reverse Opposite:
A C G T A G T C C G A T A G T C C G A T A C T G A T G C C G T A G T A C C A T G
p-value:1e-9
log p-value:-2.178e+01
Information Content per bp:1.676
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif5.91%
Number of Background Sequences with motif1059.3
Percentage of Background Sequences with motif2.20%
Average Position of motif in Targets49.7 +/- 28.3bp
Average Position of motif in Background50.4 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTGCAGAGA
CCTGCTGAGH
 G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CGTGCAGAGA---
---GCAGTGATTT
 G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCAGAGA----
NNNANTGCAGTGCNNTT
 A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T A C G T A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T

PB0199.1_Zfp161_2/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGTGCAGAGA--
GCCGCGCAGTGCGT
 A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T
C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGTGCAGAGA---
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTGCAGAGA
RTACGTGC-----
 A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGTGCAGAGA
GGACGTGC-----
 A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CGTGCAGAGA---
--TGCTGTGATTT
 G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCAGAGA--
TCNCCTGCTGNGNNN
 A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCAGAGA--
TNTCCTGCTGTGNNG
 A C G T A C G T A C G T G T A C C A T G G C A T T A C G T G A C G C T A T C A G G C T A T C A G T G C A A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G