Information for 8-GTGBCTGSAGAKG (Motif 13)

A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
Reverse Opposite:
T G A C G T A C C G A T A T G C A G C T A T C G T A G C G T C A A C T G T G C A T A G C G T C A T A G C
p-value:1e-10
log p-value:-2.313e+01
Information Content per bp:1.600
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif6.02%
Number of Background Sequences with motif1050.0
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets52.5 +/- 27.5bp
Average Position of motif in Background50.7 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGBCTGSAGAKG
CTGTCTGG-----
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGBCTGSAGAKG
VBSYGTCTGG-----
 A C G T A C G T A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGBCTGSAGAKG
TWGTCTGV-----
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GTGBCTGSAGAKG
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GTGBCTGSAGAKG
---GCTGTG----
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGBCTGSAGAKG--------
-NNCCTGNAAAAAAAAAAAAA
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGBCTGSAGAKG--------
-NNCCTGNAAAAAAAAAAAAA
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTGBCTGSAGAKG
-WDNCTGGGCA--
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A C G T G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTGBCTGSAGAKG
--NGCTN------
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GTGBCTGSAGAKG
-GGTCTGGCAT--
 A T C G C A G T A T C G A C G T A G T C A C G T A T C G T A G C T C G A T A C G G C T A C A T G A C T G
A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T