Information for 1-TGCTCAAAAATTT (Motif 2)

A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T
Reverse Opposite:
C G T A T C G A G C T A A C G T A G C T A C G T A G C T G C A T T A C G C G T A C T A G A T G C G T C A
p-value:1e-11
log p-value:-2.680e+01
Information Content per bp:1.775
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets43.3 +/- 21.5bp
Average Position of motif in Background43.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCTCAAAAATTT-
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PB0175.1_Sox4_2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGCTCAAAAATTT----
TNCNNAACAATTTTTNC
 A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T A C G T A C G T A C G T
G A C T G A C T G A T C A T G C G A C T C T G A C G T A A G T C C G T A C T G A G A C T G A C T G A C T G A C T C G A T A G T C A T G C

PH0048.1_Hoxa13/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGCTCAAAAATTT-
AAACCTCGTAAAATTT
 A C G T A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCTCAAAAATTT-
NNCNNAACAATTNT
 A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T
G C A T G A C T A G T C G T C A C G A T C T G A C G T A A G T C C G T A T C G A A G C T G A C T G A C T G C A T

PB0197.1_Zfp105_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGCTCAAAAATTT--
ATGGTTCAATAATTTTG
 A C G T A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T A C G T
C T A G A G C T C A T G T A C G A C G T A G C T T G A C T G C A T G C A A G C T T C G A C G T A A G C T C A G T A G C T A C G T C T A G

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGCTCAAAAATTT
-GCTCGTAAAAA-
 A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T
A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----TGCTCAAAAATTT
CAATTGCAAAAATAT--
 A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGCTCAAAAATTT-----
-GTTCAAAAAAAAAATTC
 A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGCTCAAAAATTT--
AATGCAATAAAATTTAT
 A C G T A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGCTCAAAAATTT
TTTCTNAGAAAN--
 A C G T A C G T A T C G A G T C C G A T A T G C C G T A C T G A C G T A C T G A G T C A C A G T A C G T C G A T
A G C T A C G T A C G T A G T C G A C T G C T A C T G A A C T G C G T A C G T A T G C A G A C T A C G T A C G T