Information for 6-AGRGCCTGCTGTT (Motif 13)

C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T
Reverse Opposite:
T G C A C G T A A G T C C G T A A T C G G T A C C G T A T A C G A C T G A T G C G A T C G T A C A G C T
p-value:1e-8
log p-value:-1.885e+01
Information Content per bp:1.719
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.08%
Number of Background Sequences with motif174.6
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets50.1 +/- 29.9bp
Average Position of motif in Background50.9 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:AGRGCCTGCTGTT-
----CCTGCTGAGH
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT---
-NNTCCTGCTGTGNNN
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT---
-TNTCCTGCTGTGNNG
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT
-CCCCCTGCTGTG
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT---
-TCNCCTGCTGNGNNN
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:6
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT-
----CCAGCTGTTN
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGRGCCTGCTGTT-
GGCCYCCTGCTGDGH
 A C G T C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:7
Orientation:forward strand
Alignment:AGRGCCTGCTGTT
-------GCTGTG
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT
-----CAGCTGTT
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGRGCCTGCTGTT-----
-NNNANTGCAGTGCNNTT
 C T G A C A T G C T A G A T C G G T A C A T G C C G A T A C T G A T G C C G A T A C T G G C A T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T