Information for 3-SCCGCCACGGCTTTTT (Motif 4)

A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
Reverse Opposite:
C T G A C G T A C G T A C G T A C G T A A C T G A G T C A G T C A C T G A G C T A T C G C T A G A T G C T C A G A T C G A T G C
p-value:1e-10
log p-value:-2.386e+01
Information Content per bp:1.793
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.4 +/- 9.8bp
Average Position of motif in Background11.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:SCCGCCACGGCTTTTT
GGGGCCGAGGCCTG--
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:SCCGCCACGGCTTTTT
NNGGCCACGCCTTTN-
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

PB0136.1_IRC900814_2/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:SCCGCCACGGCTTTTT--
--TTTTACGACTTTCCAT
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T A C G T A C G T
A C G T A C G T C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-SCCGCCACGGCTTTTT
TGCCCTGAGGGCA----
 A C G T A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:5
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:SCCGCCACGGCTTTTT
-------NGGATTAN-
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-SCCGCCACGGCTTTTT
TGCCCNNAGGGCA----
 A C G T A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:SCCGCCACGGCTTTTT
TCCGCCCCCGCATT--
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-SCCGCCACGGCTTTTT
TGCCCTNAGGGCA----
 A C G T A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:9
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:SCCGCCACGGCTTTTT-------
---------TTTTTTTTCNNGTN
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C A G T C G A T A G C T A G C T G C A T G C A T A G T C T G A C G T C A A C T G G A C T C G T A

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:SCCGCCACGGCTTTTT
------NGGGATTA--
 A T C G A T G C A G T C A T C G A G T C A T G C T C G A G T A C A C T G A C T G G T A C A C G T A C G T G A C T A C G T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T