Information for 3-TGTGACAGTGGMATWG (Motif 3)

A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
Reverse Opposite:
A G T C C G A T T C G A C G A T A C G T G T A C A G T C C G T A A G T C A G C T C T A G A C G T A G T C T G C A A G T C C G T A
p-value:1e-14
log p-value:-3.248e+01
Information Content per bp:1.799
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 25.5bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG--
---AACAATGNTATTGTT
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T T C G A C T G A A G T C C T G A G T C A A C G T T A C G A G C T G C A T C G T A A C G T C A G T A C T G C G A T A C G T

Sox11/MA0869.1/Jaspar

Match Rank:2
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG--
---AACACTGAAATTGTT
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T T C G A C G T A A G T C G T C A G T A C A C G T C T A G G T C A C T G A C G T A A C G T A C G T A C T G A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:3
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG
---AACAAAGG-----
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----TGTGACAGTGGMATWG
RTCATGTGAC----------
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGTGACAGTGGMATWG
-TTGACAGG-------
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGTGACAGTGGMATWG
-TTGACAG--------
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SOX4/MA0867.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG---
---AACACTGCAATTGTTC
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C T G A A G T C G T C A G T A C A G C T A C T G G T A C G T C A G T C A G A C T A G C T A C T G A G C T A C G T G A T C

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.50
Offset:8
Orientation:forward strand
Alignment:TGTGACAGTGGMATWG--
--------TGGAACAGMA
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A

Sox17/MA0078.1/Jaspar

Match Rank:9
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG
---GACAATGNN----
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G
A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G A C G T A C G T A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:10
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:TGTGACAGTGGMATWG--
---AACACTACCATTGTT
 A C G T A C T G A C G T A C T G C G T A A G T C C T G A C T A G C G A T A C T G A C T G G T A C C G T A A C G T C G A T A C T G A C G T A C G T
A C G T A C G T A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T