Information for 13-CCAATTGGCT (Motif 20)

T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T
Reverse Opposite:
T G C A A T C G A G T C T A G C T C G A C G T A G C A T A C G T C A T G A C T G
p-value:1e-7
log p-value:-1.744e+01
Information Content per bp:1.660
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.82%
Number of Background Sequences with motif285.1
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets56.2 +/- 29.6bp
Average Position of motif in Background51.0 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CCAATTGGCT
CCGATTGGCT
 T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.77
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGCT--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0109.1_Nkx1-1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTGGCT--
NCCCACTAATTAGCGCA
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T
A G C T G T A C A T G C G A T C T C G A A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G T C A C T G A T G C G C T A

NFYB/MA0502.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CCAATTGGCT-----
CTGATTGGTCNATTT
 T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCAATTGGCT---
-TGATTGGCTANN
 T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PH0007.1_Barx1/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTGGCT-
ATNNACTAATTACTTT
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T
C G T A G C A T C A G T G A T C T C G A T A G C G A C T T G C A G T C A A C G T A C G T C T G A A T G C A G C T C A G T C A G T

PH0127.1_Nobox/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----CCAATTGGCT--
GNTNNCTAATTAGNNCG
 A C G T A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G

PH0094.1_Lhx4/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGCT---
TAAACTAATTAGCTTTG
 A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T A C G T
C A G T G T C A C G T A T C G A A T G C G A C T T C G A C T G A A G C T A G C T C T G A A T C G A T G C A C G T C G A T A C G T C T A G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CCAATTGGCT
----TTGGCA
 T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----CCAATTGGCT---
ACCCCTAATTAGCGGTG
 A C G T A C G T A C G T A C G T T G A C G T A C T G C A C G T A G C A T A G C T A T C G T C A G T A G C A C G T A C G T A C G T A C G T
G C T A T G A C T G A C T G A C T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A G T C C A T G C A T G A C G T C T A G