Information for 5-CAAAGTCCAA (Motif 2)

T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
Reverse Opposite:
A G C T A C G T C A T G C T A G C T G A A T G C G A C T A C G T C G A T A T C G
p-value:1e-16
log p-value:-3.853e+01
Information Content per bp:1.669
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.51%
Number of Background Sequences with motif317.8
Percentage of Background Sequences with motif0.83%
Average Position of motif in Targets46.4 +/- 27.5bp
Average Position of motif in Background50.6 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTCCAA---
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.83
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGTCCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.83
Offset:-6
Orientation:forward strand
Alignment:------CAAAGTCCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:4
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGTCCAA-
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAAGTCCAA
CAAAGGTCAG
 T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:6
Score:0.63
Offset:-6
Orientation:forward strand
Alignment:------CAAAGTCCAA-
AAAGGTCAAAGGTCAAC
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTCCAA---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGTCCAA
TAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CAAAGTCCAA
TGGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTCCAA---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T T A G C G C T A T G C A C T G A T A C G A G C T G A T C G T A C T G C A T C G A A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G