Information for 4-CAAAGGAATCCATCAA (Motif 10)

A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
Reverse Opposite:
A G C T A G C T A C T G C T G A C G A T A C T G A C T G G T C A A G C T A C G T A G T C A G T C A C G T A C G T A C G T A C T G
p-value:1e-11
log p-value:-2.535e+01
Information Content per bp:1.908
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.8 +/- 17.4bp
Average Position of motif in Background83.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAAAGGAATCCATCAA
----GYCATCMATCAT
 A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
A C G T A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CAAAGGAATCCATCAA-
-----CCATCAATCAAA
 A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGAATCCATCAA
AAACAGACAAAGGAAT-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGAATCCATCAA
TATAGATCAAAGGAAAA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGAATCCATCAA
AACAAAGG----------
 A C G T A C G T A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CAAAGGAATCCATCAA------
-----TCACCCATCAATAAACA
 A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGAATCCATCAA
TATAGATCAAAGGAAAA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAAAGGAATCCATCAA
-AGAGGAA--------
 A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
A C G T C G T A T A C G T G C A C T A G C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAAAGGAATCCATCAA
---RGCCATYAATCA-
 A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGAATCCATCAA
RACAAWGG----------
 A C G T A C G T A G T C C G T A G T C A C G T A A C T G A C T G G T C A C T G A A C G T A G T C G T A C C G T A A G C T A G T C C T G A C T G A
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T