Information for 4-SGGCAGGGAGSCMKRR (Motif 12)

A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
Reverse Opposite:
A G C T A G T C G T A C A C G T A C T G A T C G A G T C A C G T A G T C A G T C A G T C C G A T A C T G A G T C A G T C A T C G
p-value:1e-10
log p-value:-2.513e+01
Information Content per bp:1.855
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.61%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets75.6 +/- 10.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:SGGCAGGGAGSCMKRR
TGGCAGNCTGCCAG--
 A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:SGGCAGGGAGSCMKRR-
--SCAGYCADGCATGAC
 A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A A C G T
A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-SGGCAGGGAGSCMKRR
TTGGCANNNTGCCAAG-
 A C G T A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---SGGCAGGGAGSCMKRR
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--SGGCAGGGAGSCMKRR
CACAGCAGGGGG------
 A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:SGGCAGGGAGSCMKRR
TGGCACCATGCCAA--
 A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:SGGCAGGGAGSCMKRR
-----CGGAGC-----
 A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:SGGCAGGGAGSCMKRR--
--GCAGCCAAGCGTGACN
 A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A A C G T A C G T
A C G T A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------SGGCAGGGAGSCMKRR
GGGGCTYGKCTGGGA-------
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---SGGCAGGGAGSCMKRR
NCNCAGCGGGGGGTC----
 A C G T A C G T A C G T A T G C A C T G A C T G A G T C C G T A A C T G A C T G A C T G C G T A A C T G A T G C A G T C G T C A A C T G C T A G C T G A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T