Information for 1-YTGGCWNNNWGCCARV (Motif 1)

G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
Reverse Opposite:
A G C T G A T C C A G T A C T G T C A G T G A C G C T A A T C G A T C G A T C G C G A T A C T G G T A C A G T C G T C A C T A G
p-value:1e-269
log p-value:-6.197e+02
Information Content per bp:1.574
Number of Target Sequences with motif249.0
Percentage of Target Sequences with motif30.44%
Number of Background Sequences with motif546.4
Percentage of Background Sequences with motif1.15%
Average Position of motif in Targets53.0 +/- 20.2bp
Average Position of motif in Background51.2 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.98
Offset:0
Orientation:reverse strand
Alignment:YTGGCWNNNWGCCARV
TTGGCANNNTGCCAAG
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:YTGGCWNNNWGCCARV
-TGGCAGNCTGCCAG-
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV
-TGGCACCATGCCAA-
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.69
Offset:9
Orientation:reverse strand
Alignment:YTGGCWNNNWGCCARV
---------TGCCAA-
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:7
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV
-------CGTGCCAAG
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.61
Offset:7
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV-
-------GGTGCCAAGT
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV--
-GGGRAARRGRMCAGMTG
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A A C G T A C G T
A C G T C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.59
Offset:8
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV
--------TTGCCAAG
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.59
Offset:8
Orientation:forward strand
Alignment:YTGGCWNNNWGCCARV-
--------ATGCCAACC
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.57
Offset:8
Orientation:reverse strand
Alignment:YTGGCWNNNWGCCARV--
--------ATGCCAGACN
 G A T C C A G T A C T G C A T G T G A C G C T A T A G C T A G C T A G C C G A T A C T G A G T C A G T C G T C A C T A G T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C