Information for 11-GCMTTGWGWGKRRTSW (Motif 13)

A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
Reverse Opposite:
C G T A T A G C C G T A A G T C A G T C G T C A A G T C C G A T A G T C C G A T A G T C C G T A C G T A A C T G A C T G A G T C
p-value:1e-11
log p-value:-2.619e+01
Information Content per bp:1.810
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 23.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF143/MA0088.2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GCMTTGWGWGKRRTSW
CAATGCATTGTGGGTA----
 A C G T A C G T A C G T A C G T A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A A C G T A C G T A C G T A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCMTTGWGWGKRRTSW
GCTTCGTGGGGGGTCT
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCMTTGWGWGKRRTSW
--CTTGAGTGGCT---
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GCMTTGWGWGKRRTSW
-CTTCGTGGGGGGTC-
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCMTTGWGWGKRRTSW
--BTBRAGTGSN----
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCMTTGWGWGKRRTSW
-CTTCGCGGGGGGTC-
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T T A G C C A G T G A C T G A T C T C A G G A T C C T A G C A T G A C T G C T A G C A T G C T A G A G C T T G A C A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCMTTGWGWGKRRTSW
CCWTTGTYYB------
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCMTTGWGWGKRRTSW
-CTTTGT---------
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GCMTTGWGWGKRRTSW
TGACCTTGAN--------
 A C G T A C G T A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCMTTGWGWGKRRTSW
---TTGAGTGSTT---
 A C T G A G T C G T A C C G A T A C G T A C T G C G T A A C T G C G T A A C T G A C G T C T A G C T A G A C G T A T C G C G A T
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T