Information for 9-AAATATTYCCAAG (Motif 13)

G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G
Reverse Opposite:
G T A C A C G T C G A T A C T G C A T G C T A G C G T A C G T A A C G T G T C A C G A T G C A T A C G T
p-value:1e-10
log p-value:-2.400e+01
Information Content per bp:1.773
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif55.2
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets52.8 +/- 22.0bp
Average Position of motif in Background43.0 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATATTYCCAAG
CTAATATTGCTAAA
 A C G T G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AAATATTYCCAAG
CTAATATTGCTAAA
 A C G T G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G
T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAATATTYCCAAG
AATTATT------
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AAATATTYCCAAG
---HTTTCCCASG
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G
A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AAATATTYCCAAG--
----ATTTCCAAGAA
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:forward strand
Alignment:AAATATTYCCAAG-
----ACATCAAAGG
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

EBF1/MA0154.3/Jaspar

Match Rank:7
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAATATTYCCAAG-----
----ATTCCCAAGGGAAT
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A A C G T G A C T A T G C A G T C A G T C G C T A C G T A T C A G T C A G C A T G C T G A G T C A G A C T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:AAATATTYCCAAG-
----ACWTCAAAGG
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

PH0129.1_Otx1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AAATATTYCCAAG-
NNNAATTAATCCCCNCN
 A C G T A C G T A C G T G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:10
Score:0.54
Offset:5
Orientation:forward strand
Alignment:AAATATTYCCAAG--
-----TTCCKNAGAA
 G T C A C G T A C G T A A C G T C G T A C G A T A C G T A G T C G T A C G T A C C G T A C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T G A T C G A T C A C G T G A T C C T G A T A C G C G T A G T C A