Information for 13-CGAGTGCTTCTCC (Motif 16)

A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A C T G C G T A C G T A A C T G A G T C C G T A A G T C A C G T A G T C A C T G
p-value:1e-7
log p-value:-1.641e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.0 +/- 11.4bp
Average Position of motif in Background43.0 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGAGTGCTTCTCC
TTRAGTGSYK----
 A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGAGTGCTTCTCC
TTAAGTGCTT----
 A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CGAGTGCTTCTCC
TTGAGTGSTT----
 A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:4
Score:0.58
Offset:5
Orientation:forward strand
Alignment:CGAGTGCTTCTCC
-----GCTTCC--
 A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGAGTGCTTCTCC
CTTGAGTGGCT----
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CGAGTGCTTCTCC
CTYRAGTGSY-----
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGAGTGCTTCTCC
BTBRAGTGSN-----
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGAGTGCTTCTCC-
----CNGTCCTCCC
 A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGAGTGCTTCTCC
NTCAAGTGG------
 A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGAGTGCTTCTCC-
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A G T C A C T G C G T A A C T G A C G T A C T G A G T C A C G T A C G T A G T C A C G T A G T C A G T C A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T