Information for 17-ATGGGATTTCAAA (Motif 17)

C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C G T A T G C A G T C A G T C C G T A A C G T
p-value:1e-10
log p-value:-2.471e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.4 +/- 24.1bp
Average Position of motif in Background19.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0098.1_Zfp410_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----ATGGGATTTCAAA
TATTATGGGATGGATAA
 A C G T A C G T A C G T A C G T C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
C G A T T C G A C A G T C G A T G T C A C G A T C A T G C A T G C A T G C T G A C A G T C T A G A C T G T G C A C A G T C G T A T G C A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:ATGGGATTTCAAA
---CGGTTTCAAA
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ATGGGATTTCAAA
-GGGGATTTCC--
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:ATGGGATTTCAAA
NGGGGATTTCCC-
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:ATGGGATTTCAAA
-GGGAATTTCC--
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATGGGATTTCAAA
-GGGGATTTCC--
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

PH0165.1_Six6_1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ATGGGATTTCAAA---
AATAGGGTATCAATTAT
 A C G T C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A A C G T A C G T A C G T
C T G A G C T A C G A T T C G A T C A G A C T G T C A G A C G T C T G A A C G T G A T C C G T A G T C A C G A T G C A T G C T A A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGGGATTTCAAA
-GGGAATTTCC--
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A
A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:ATGGGATTTCAAA-
--GGGATTGCATNN
 C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A A C G T
A C G T A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ATGGGATTTCAAA-
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T C G T A A C G T A C T G A C T G A T C G C G T A A C G T A C G T A C G T T A G C G T C A C G T A G T C A A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T