Information for 12-GCAGCCAATC (Motif 12)

T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C
Reverse Opposite:
C A T G T C G A G A C T G A C T T A C G C A T G A G T C A G C T T A C G A T G C
p-value:1e-12
log p-value:-2.917e+01
Information Content per bp:1.657
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.21%
Number of Background Sequences with motif1484.6
Percentage of Background Sequences with motif3.12%
Average Position of motif in Targets50.1 +/- 27.2bp
Average Position of motif in Background48.4 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:GCAGCCAATC--
--AGCCAATCGG
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T A C G T
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCAGCCAATC-
ACTAGCCAATCA
 A C G T T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GCAGCCAATC--
AAATGGACCAATCAG
 A C G T A C G T A C G T T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATC
BCAGACWA--
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GCAGCCAATC
--TGCCAA--
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATC
CGTGCCAAG-
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCAGCCAATC
-CAGCC----
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATC--
SCTGTCAVTCAV
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCAGCCAATC--
NCTGTCAATCAN
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAATC-----
SCAGYCADGCATGAC
 T A C G A T G C C T G A C T A G G T A C A T G C C T G A C T G A A G C T G T A C A C G T A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C