Information for 8-YARAGGTCCC (Motif 6)

A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
Reverse Opposite:
A C T G C A T G A C T G C T G A T G A C T A G C C G A T A G T C A G C T T C G A
p-value:1e-12
log p-value:-2.786e+01
Information Content per bp:1.652
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.88%
Number of Background Sequences with motif1060.7
Percentage of Background Sequences with motif2.22%
Average Position of motif in Targets48.2 +/- 27.7bp
Average Position of motif in Background50.1 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---YARAGGTCCC---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---YARAGGTCCC---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---YARAGGTCCC
ANGNAAAGGTCA-
 A C G T A C G T A C G T A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YARAGGTCCC---
CAAAGGTCAAGGG
 A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:YARAGGTCCC
--AAGGTCAC
 A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:YARAGGTCCC
CAAAGGTCAG
 A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:YARAGGTCCC
-AGRGGTCA-
 A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

GFY(?)/Promoter/Homer

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--YARAGGTCCC
ACTACAATTCCC
 A C G T A C G T A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----YARAGGTCCC
GAGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:YARAGGTCCC
TCAAGGTCAN
 A G C T C T G A T C A G G C T A A T C G A C T G G A C T G T A C G T A C G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C