Information for 7-CAGCATCCAAKGA (Motif 12)

A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
Reverse Opposite:
C G A T A G T C T G C A A G C T G C A T A C T G C T A G G C T A C G A T A C T G T A G C A C G T C T A G
p-value:1e-12
log p-value:-2.888e+01
Information Content per bp:1.743
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets48.7 +/- 25.0bp
Average Position of motif in Background61.2 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGCATCCAAKGA
ATTTGCATACAATGG
 A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCATCCAAKGA
CCATCAATCAAA--
 A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CAGCATCCAAKGA
TGAGTCAGCA--------
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0181.1_Spdef_2/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGCATCCAAKGA-
GATAACATCCTAGTAG
 A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGCATCCAAKGA
CAGCC--------
 A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGCATCCAAKGA
GTCAGCANNTN----
 A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CAGCATCCAAKGA
-ACTAGCCAATCA
 A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

MAFK/MA0496.1/Jaspar

Match Rank:8
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------CAGCATCCAAKGA
CTGAGTCAGCAATTT----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
G T A C G C A T C T A G C G T A T A C G A G C T G T A C C G T A A C T G A T G C G C T A C G T A G C A T G C A T G C A T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CAGCATCCAAKGA
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAGCATCCAAKGA
ATTTCCCAGVAKSCY----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C C G T A C A G T G A T C A G T C C G T A C T G A A C G T A C T G C G T A
T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C A C G T A C G T A C G T A C G T