Information for 2-AGTGCAARAGGWCAGT (Motif 3)

C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
Reverse Opposite:
T G C A A G T C C G A T A C T G C G A T A G T C A G T C A G C T A G T C A C G T C G A T A C T G T A G C C G T A A G T C A G C T
p-value:1e-20
log p-value:-4.682e+01
Information Content per bp:1.748
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets44.6 +/- 22.3bp
Average Position of motif in Background45.7 +/- 20.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-AGTGCAARAGGWCAGT
GAGGTCAAAAGGTCA--
 A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGTGCAARAGGWCAGT
AAAGGTCAAAAGGTCA--
 A C G T A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGTGCAARAGGWCAGT
AAGGTCAAAAGGTCAA-
 A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

RARA/MA0729.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTGCAARAGGWCAGT-
GAGGTCAAAAGGTCAATG
 A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGTGCAARAGGWCAGT
ACWTCAAAGG------
 C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGTGCAARAGGWCAGT
TATAGATCAAAGGAAAA--
 A C G T A C G T A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A A C G T A C G T

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGTGCAARAGGWCAGT
ACATCAAAGGNA----
 C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGTGCAARAGGWCAGT
AAAGATCAAAGGGTT---
 A C G T A C G T C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AGTGCAARAGGWCAGT
-ATGCAACAGGTGG--
 C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
A C G T T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGTGCAARAGGWCAGT
ACATCAAAGG------
 C T G A A C T G C G A T A T C G A G T C C G T A C G T A C T A G C T G A A C T G T C A G G C A T G T A C C G T A A C T G A C G T
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T