Information for 7-GATTCACAGATCA (Motif 5)

T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
Reverse Opposite:
C A G T T A C G G T C A A G C T A G T C C G A T T A C G A C G T A C T G C G T A G C T A A G C T A G T C
p-value:1e-14
log p-value:-3.329e+01
Information Content per bp:1.675
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.62%
Number of Background Sequences with motif107.3
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets49.5 +/- 28.6bp
Average Position of motif in Background49.5 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GATTCACAGATCA
--TTMACACCTT-
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T A C G T C A G T G A C T G T A C C T G A A T G C T C G A T A G C G T A C G A C T G A C T A C G T

TBX21/MA0690.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GATTCACAGATCA
--TTCACACCTT-
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T A C G T C G A T A G C T T G A C C T G A G T A C T C G A T G A C G A T C G A C T G A C T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GATTCACAGATCA-------
---TCACCCATCAATAAACA
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

TBR1/MA0802.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GATTCACAGATCA
-TTTCACACCT--
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T C G A T C G A T G A C T T G A C C T G A T A G C T C G A T A G C G A T C G A C T A C G T A C G T

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GATTCACAGATCA--
GGATTGACAGGTCNTT
 A C G T T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A A C G T A C G T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GATTCACAGATCA
-KTTCACACCT--
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T C A G T C A G T A C G T T A G C G C T A A G T C C T G A G T A C G A T C G C A T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GATTCACAGATCA
GGGGTCAAAGGTCA
 A C G T T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GATTCACAGATCA
GGGGTCAAAGGTCA
 A C G T T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GATTCACAGATCA
-ATTAACACCT--
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T

TBX20/MA0689.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GATTCACAGATCA
-CTTCACACCTA-
 T C A G T C G A C G A T G A C T G T A C G T C A A T G C C G T A T A C G C T G A A C G T A T G C G T C A
A C G T A G T C G C A T G C A T G T A C G T C A T G A C G T C A G T A C A G T C G A C T G C T A A C G T