Information for 4-TRWGTAAACA (Motif 3)

G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
Reverse Opposite:
A C G T C T A G A G C T A G C T A C G T C T G A G A T C G C A T G A T C C G T A
p-value:1e-30
log p-value:-6.915e+01
Information Content per bp:1.620
Number of Target Sequences with motif125.0
Percentage of Target Sequences with motif16.36%
Number of Background Sequences with motif2386.1
Percentage of Background Sequences with motif5.03%
Average Position of motif in Targets48.0 +/- 25.8bp
Average Position of motif in Background48.2 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:TRWGTAAACA
AAAGTAAACA
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TRWGTAAACA--
TATGTAAACANG
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A A C G T A C G T
G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:TRWGTAAACA
AAAGTAAACA
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:4
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--TRWGTAAACA---
NCWRWGTAAACANSV
 A C G T A C G T G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Foxa2/MA0047.2/Jaspar

Match Rank:5
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--TRWGTAAACA
NCTAAGTAAACA
 A C G T A C G T G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:6
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TRWGTAAACA----
CAAAGTAAACANNNN
 A C G T G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXP2/MA0593.1/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:forward strand
Alignment:TRWGTAAACA--
-AAGTAAACAAA
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A A C G T A C G T
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:8
Score:0.94
Offset:0
Orientation:forward strand
Alignment:TRWGTAAACA--
WWTRTAAACAVG
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A A C G T A C G T
C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

FOXO4/MA0848.1/Jaspar

Match Rank:9
Score:0.94
Offset:3
Orientation:forward strand
Alignment:TRWGTAAACA
---GTAAACA
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
A C G T A C G T A C G T T C A G C G A T T G C A G T C A C T G A G A T C C G T A

FOXO6/MA0849.1/Jaspar

Match Rank:10
Score:0.94
Offset:3
Orientation:forward strand
Alignment:TRWGTAAACA
---GTAAACA
 G C A T C T A G C G T A C T A G A G C T G T C A T C G A C T G A A G T C G T C A
A C G T A C G T A C G T C T A G C G A T T G C A G T C A C G T A A G T C C T G A