Information for 10-GGGTCRGAGG (Motif 25)

C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G
Reverse Opposite:
A G T C A G T C A G C T G T A C A G C T A C T G C G T A G A T C A G T C G A T C
p-value:1e-8
log p-value:-2.059e+01
Information Content per bp:1.853
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif3.93%
Number of Background Sequences with motif490.7
Percentage of Background Sequences with motif1.03%
Average Position of motif in Targets43.9 +/- 25.9bp
Average Position of motif in Background50.5 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GGGTCRGAGG---
AGGGGTCAGAGGTCA
 A C G T A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GGGTCRGAGG---
GAGGTCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

RXRB/MA0855.1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGGTCRGAGG---
GGGGTCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGGTCRGAGG
AGGTCA----
 C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTCRGAGG---
GAGGTCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTCRGAGG---
GGGGTCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGGTCRGAGG---
GGGGTCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGGTCRGAGG
AGRGGTCA----
 A C G T A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGGTCRGAGG
CAAAGGTCAAGGG
 A C G T A C G T A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGGTCRGAGG---
TGGGGCAAAGGTCA
 A C G T C T A G A C T G C T A G A C G T A G T C C T G A A C T G C T G A A C T G C T A G A C G T A C G T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A