Information for 2-VAARGCTCAAGGTCAS (Motif 2)

T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
Reverse Opposite:
T A G C C G A T C A T G T C G A A T G C A G T C A G C T A C G T A C T G T C G A T A C G G T A C G A C T A G C T A G C T A C G T
p-value:1e-34
log p-value:-8.048e+01
Information Content per bp:1.627
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif6.81%
Number of Background Sequences with motif301.0
Percentage of Background Sequences with motif0.63%
Average Position of motif in Targets53.7 +/- 23.6bp
Average Position of motif in Background46.9 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2/MA0505.1/Jaspar

Match Rank:1
Score:0.92
Offset:2
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS-
--AAGTTCAAGGTCAGC
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G A C G T
A C G T A C G T T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.90
Offset:3
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
---AGGTCAAGGTCA-
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.88
Offset:5
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
-----BTCAAGGTCA-
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.87
Offset:3
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
---AGGTCAAGGTCA-
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.86
Offset:5
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
-----NTCAAGGTCA-
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.85
Offset:6
Orientation:reverse strand
Alignment:VAARGCTCAAGGTCAS
------TCAAGGTCAN
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

ESRRB/MA0141.3/Jaspar

Match Rank:7
Score:0.85
Offset:6
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS-
------TCAAGGTCATA
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrrg/MA0643.1/Jaspar

Match Rank:8
Score:0.84
Offset:6
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
------TCAAGGTCAT
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:9
Score:0.82
Offset:7
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS-
-------CAAGGHCANV
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

Esrra/MA0592.2/Jaspar

Match Rank:10
Score:0.81
Offset:5
Orientation:forward strand
Alignment:VAARGCTCAAGGTCAS
-----TTCAAGGTCAT
 T G A C T C G A T C G A C T G A C A T G A T G C A G C T G T A C G T C A C T G A C T A G A T C G A G C T G A T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T