Information for 2-CTGTCCAAGGTGC (Motif 4)

A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
Reverse Opposite:
A T C G A T G C C T G A A G T C A T G C A C G T A C G T A C T G C T A G G T C A A G T C C G T A T C A G
p-value:1e-18
log p-value:-4.251e+01
Information Content per bp:1.793
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif14.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets52.9 +/- 21.1bp
Average Position of motif in Background54.1 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCAAGGTGC----
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C A C G T A C G T A C G T A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCAAGGTGC---
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C A C G T A C G T A C G T
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGTCCAAGGTGC
CTGTTCCTGG---
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCAAGGTGC
GCTGTCAA------
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCAAGGTGC
CCTGTCAA------
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCCAAGGTGC
NTGTCAN------
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGTCCAAGGTGC-
-TGCCCTGAGGGCA
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CTGTCCAAGGTGC-
-TGCCCTGAGGGCA
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGTCCAAGGTGC
CTGACCTTTG---
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGTCCAAGGTGC-
-TGCCCTNAGGGCA
 A G T C A C G T A C T G A C G T A G T C A G T C T G C A T C G A A T C G A C T G A G C T A T C G A T G C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A