Information for 16-AATATTKRHC (Motif 29)

C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
Reverse Opposite:
C T A G C G A T A G T C G T C A G T C A C G T A A C G T G T C A C A G T A G C T
p-value:1e-6
log p-value:-1.467e+01
Information Content per bp:1.714
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif32.1
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets28.2 +/- 14.6bp
Average Position of motif in Background44.4 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.89
Offset:-6
Orientation:reverse strand
Alignment:------AATATTKRHC
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.89
Offset:-6
Orientation:reverse strand
Alignment:------AATATTKRHC
NNTNNCAATATTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATATTKRHC
GAATATTCAT-
 A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-AATATTKRHC
AATTATT----
 A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AATATTKRHC--
-ATATTTACATA
 C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C A C G T A C G T
A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AATATTKRHC--
--TRTTTACTTW
 C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C A C G T A C G T
A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

Foxd3/MA0041.1/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATATTKRHC-
GAATGTTTGTTT
 A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C A C G T
C T A G G C T A G C T A G A C T C T A G A C G T C G A T C A G T C T A G G A C T A C G T A G C T

FOXB1/MA0845.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AATATTKRHC--
-ATATTTACATA
 C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C A C G T A C G T
A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A

PB0197.1_Zfp105_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AATATTKRHC---
NAAANTTATTGAANCAN
 A C G T A C G T A C G T A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C A C G T A C G T A C G T
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATATTKRHC
GHATATKCAT-
 A C G T C T G A G C T A A C G T C G T A A C G T A C G T C A G T T C A G G C T A G A T C
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T