Information for 13-GGGAAATTCC (Motif 25)

C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C
Reverse Opposite:
A C T G T A C G G T C A T C G A A G C T A C G T A G C T A T G C G A T C G T A C
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.535
Number of Target Sequences with motif213.0
Percentage of Target Sequences with motif23.85%
Number of Background Sequences with motif5177.1
Percentage of Background Sequences with motif16.14%
Average Position of motif in Targets49.6 +/- 28.1bp
Average Position of motif in Background49.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.91
Offset:1
Orientation:forward strand
Alignment:GGGAAATTCC-
-GGAAATTCCC
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:GGGAAATTCC-
-GGAAATTCCC
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T
A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:GGGAAATTCC--
GGGAAATCCCCN
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:GGGAAATTCC-
-GGAAANCCCC
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGGAAATTCC-
-GGAAATCCCC
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGGAAATTCC--
AGGGGAATCCCCT
 A C G T C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGGAAATTCC-
GGGGGAATCCCC
 A C G T C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GGGAAATTCC---
---GCATTCCAGN
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

TEAD4/MA0809.1/Jaspar

Match Rank:9
Score:0.68
Offset:2
Orientation:forward strand
Alignment:GGGAAATTCC--
--CACATTCCAT
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T A C G T
A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:GGGAAATTCC---
---RCATTCCWGG
 C A T G C T A G T A C G T C G A T G C A T C G A A G C T C A G T A T G C T G A C A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G