Information for 1-CGCCCCCTKSTGG (Motif 2)

A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G
Reverse Opposite:
G T A C A G T C C T G A T A G C G T C A G T C A A C T G C T A G A C T G A C T G A T C G G T A C C T A G
p-value:1e-29
log p-value:-6.854e+01
Information Content per bp:1.753
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.82%
Number of Background Sequences with motif137.3
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets51.5 +/- 23.7bp
Average Position of motif in Background46.9 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.92
Offset:-6
Orientation:forward strand
Alignment:------CGCCCCCTKSTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.90
Offset:-3
Orientation:reverse strand
Alignment:---CGCCCCCTKSTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.86
Offset:-4
Orientation:forward strand
Alignment:----CGCCCCCTKSTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----CGCCCCCTKSTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CGCCCCCTKSTGG-
--CCCCCTGCTGTG
 A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTKSTGG--
GGCCYCCTGCTGDGH
 A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

KLF13/MA0657.1/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CGCCCCCTKSTGG
ATGCCACGCCCCTTTTTG-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G
C T G A C A G T C T A G G T A C G T A C C T G A A T G C C T A G A G T C G T A C G A T C G T A C A G C T G A C T C A G T C A G T C A G T C A T G A C G T

KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGCCCCCTKSTGG
GCCMCGCCCMCY-----
 A C G T A C G T A C G T A C G T A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G
T A C G A G T C G A T C T G A C G A T C C T A G A G T C A G T C A G T C G T C A A G T C G A T C A C G T A C G T A C G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGCCCCCTKSTGG
TTCCCCCTAC---
 A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G
A G C T G A C T G T A C G T A C A T G C G T A C G T A C A C G T G T A C T A G C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCCCCCTKSTGG-
GACCCCCCGCTGTG
 A G T C A C T G A T G C A G T C G T A C A G T C A G T C A C G T C A G T A T C G A G C T A C T G A C T G A C G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G