Information for 4-GTTCAAAGTC (Motif 4)

C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C
Reverse Opposite:
T A C G G T C A A T G C A G C T G A C T C G A T C A T G C G T A G T C A G A T C
p-value:1e-21
log p-value:-4.945e+01
Information Content per bp:1.655
Number of Target Sequences with motif72.0
Percentage of Target Sequences with motif8.42%
Number of Background Sequences with motif1026.2
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets53.8 +/- 27.1bp
Average Position of motif in Background49.4 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAGTC----
GGGGTCAAAGTCCAAT
 A C G T A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GTTCAAAGTC--
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GTTCAAAGTC--
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

Esrra/MA0592.2/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GTTCAAAGTC--
-TTCAAGGTCAT
 C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T
A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GTTCAAAGTC-
AGGTCAAGGTCA
 A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GTTCAAAGTC---
AAGTTCAAGGTCAGC
 A C G T A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-GTTCAAAGTC-
AGGTCAAGGTCA
 A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTCAAAGTC------
GGCAAAAGTCCAATAA
 C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GTTCAAAGTC
ACATCAAAGG-
 A C G T C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:GTTCAAAGTC---
--TCAAGGTCATA
 C T A G C A G T G C A T G T A C G C T A C T G A T C G A T A C G C A G T A T G C A C G T A C G T A C G T
A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A