Information for 3-GGTTCAAAGTCCA (Motif 5)

C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
Reverse Opposite:
C G A T C A T G C T A G T C G A T G A C G A C T A G C T A C G T T C A G C G T A T G C A G T A C G T A C
p-value:1e-19
log p-value:-4.573e+01
Information Content per bp:1.638
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.74%
Number of Background Sequences with motif343.4
Percentage of Background Sequences with motif0.72%
Average Position of motif in Targets46.1 +/- 23.8bp
Average Position of motif in Background50.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--GGTTCAAAGTCCA
AGAGTCCAAAGTCCA
 A C G T A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---GGTTCAAAGTCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.81
Offset:1
Orientation:forward strand
Alignment:GGTTCAAAGTCCA----
-GGCAAAAGTCCAATAA
 C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

RXRG/MA0856.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GGTTCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGTTCAAAGTCCA
TGGGGCAAAGGTCA
 A C G T C A T G C A T G A C G T G C A T A G T C G T C A T C G A C G T A A C T G A G C T A G T C G A T C G C T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A