Information for 6-GCWGCMAGGTCACAGA (Motif 14)

C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
Reverse Opposite:
A G C T A G T C A C G T A C T G A C G T A C T G C T G A A G T C A G T C A G C T C A T G A T C G G A T C C G T A A T C G A G T C
p-value:1e-13
log p-value:-3.057e+01
Information Content per bp:1.730
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif12.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.3 +/- 22.3bp
Average Position of motif in Background60.9 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.66
Offset:5
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA
-----AAGGTCAC---
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GCWGCMAGGTCACAGA-
------AAACCACAGAN
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GCWGCMAGGTCACAGA
---TCAAGGTCAN---
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.58
Offset:10
Orientation:reverse strand
Alignment:GCWGCMAGGTCACAGA
----------CACAGN
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA
--ATCAAGGTCA----
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA-
-----NWAACCACADNN
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA
----CAAGGHCANV--
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCWGCMAGGTCACAGA
KGTTGCTAGGMAACA--
 A C G T C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA
------AGGTCA----
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCWGCMAGGTCACAGA
---TCAAGGTCAT---
 C T A G A T G C G C A T C A T G A T G C G T A C T C G A C T A G T C A G G A C T A G T C C G T A A G T C G T C A C T A G C T G A
A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T A C G T