Information for 7-BRACCAATCA (Motif 5)

A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A
Reverse Opposite:
A G C T A C T G C G T A A G C T C G A T A C T G A C T G G A C T G A C T T C G A
p-value:1e-16
log p-value:-3.812e+01
Information Content per bp:1.651
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif8.11%
Number of Background Sequences with motif1182.6
Percentage of Background Sequences with motif2.62%
Average Position of motif in Targets46.5 +/- 25.2bp
Average Position of motif in Background49.4 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--BRACCAATCA
ACTAGCCAATCA
 A C G T A C G T A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----BRACCAATCA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.88
Offset:1
Orientation:forward strand
Alignment:BRACCAATCA-
-AGCCAATCGG
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-BRACCAATCA-------
TGGACCAATCAGCACTCT
 A C G T A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.82
Offset:3
Orientation:forward strand
Alignment:BRACCAATCA-
---CCAATCAA
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PH0026.1_Duxbl/Jaspar

Match Rank:6
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-BRACCAATCA------
CGACCCAATCAACGGTG
 A C G T A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

MSX2/MA0708.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:BRACCAATCA-
---CCAATTAA
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

PBX1/MA0070.1/Jaspar

Match Rank:8
Score:0.70
Offset:0
Orientation:forward strand
Alignment:BRACCAATCA--
CCATCAATCAAA
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:forward strand
Alignment:BRACCAATCA---
---CAAATCACTG
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

EN2/MA0642.1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:BRACCAATCA--
--CCCAATTAGC
 A G C T C T G A C T G A A G T C A G T C G C T A T C G A A C G T T G A C T C G A A C G T A C G T
A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C