Information for 6-GACGTCACGT (Motif 4)

A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
Reverse Opposite:
G T C A T G A C T A C G A G C T T A C G T G C A A T G C A T C G A C G T T A G C
p-value:1e-18
log p-value:-4.160e+01
Information Content per bp:1.665
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif5.84%
Number of Background Sequences with motif603.4
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets50.6 +/- 26.7bp
Average Position of motif in Background49.5 +/- 36.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRE(bZIP)/Promoter/Homer

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GACGTCACGT
CGGTGACGTCAC--
 A C G T A C G T A C G T A C G T A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
A T G C A T C G T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C A C G T A C G T

Arntl/MA0603.1/Jaspar

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:GACGTCACGT--
--GGTCACGTGC
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T A C G T A C G T
A C G T A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C

CREB1/MA0018.2/Jaspar

Match Rank:3
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GACGTCACGT
TGACGTCA---
 A C G T A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
G C A T A C T G C T G A A G T C A T C G A C G T A T G C T C G A A C G T A C G T A C G T

BHLHE41/MA0636.1/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GACGTCACGT---
---GTCACGTGAC
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T A C G T A C G T A C G T
A C G T A C G T A C G T T C A G C A G T A G T C C G T A A G T C C T A G A G C T A T C G G T C A A G T C

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GACGTCACGT
-ACGTCA---
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
A C G T C T G A A G T C T C A G A C G T G T A C C G T A A C G T A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:6
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GACGTCACGT--
CCGGTCACGTGA
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T A C G T A C G T
A T G C A T G C A T C G T A C G A G C T A G T C G C T A A G T C T C A G G A C T A C T G T C G A

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GACGTCACGT--
--GGTCACGTGA
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T A C G T A C G T
A C G T A C G T T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A

JDP2(var.2)/MA0656.1/Jaspar

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GACGTCACGT
GATGACGTCATC-
 A C G T A C G T A C G T A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
T A C G T C G A A G C T C A T G G T C A A G T C T C A G G A C T T G A C T G C A A G C T T G A C A C G T

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:9
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----GACGTCACGT
NGRTGACGTCAY--
 A C G T A C G T A C G T A C G T A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
T A G C C T A G T C G A G A C T A C T G C T G A A G T C T C A G G C A T T G A C C T G A A G C T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GACGTCACGT
--AGTCACGC
 A T C G T G C A T A G C T A C G A C G T A T G C T C G A A T G C A C T G C A G T
A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G