Information for 17-CCAGCTCCGGGAG (Motif 16)

A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
Reverse Opposite:
A G T C C G A T A T G C A T G C A G T C A C T G A T C G C T G A A C T G A G T C A C G T A C T G C T A G
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.897
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif17.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets61.3 +/- 19.7bp
Average Position of motif in Background42.1 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:CCAGCTCCGGGAG
---GCTCCG----
 A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCTCCGGGAG
CGCAGCTGCG----
 A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CCAGCTCCGGGAG
NCAGCTGCTG---
 A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCAGCTCCGGGAG
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCAGCTCCGGGAG
NNACAGCTGC-----
 A C G T A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T

Gabpa/MA0062.2/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCTCCGGGAG
NCCACTTCCGG---
 A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
A C T G A G T C A G T C C T G A A G T C C A G T A C G T A G T C G T A C A C T G A T C G A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCAGCTCCGGGAG
-TACATCCGGGT-
 A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCAGCTCCGGGAG
-CAGCC-------
 A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCAGCTCCGGGAG
GACAGCTGCAG---
 A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCAGCTCCGGGAG
AGCAGCTGCTNN--
 A C G T A G T C A G T C C G T A A C T G A G T C A G C T A T G C A G T C A C T G A T C G A T C G C G T A A C T G
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T