Information for 5-CWSYKTTCTYTGSCAG (Motif 11)

A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G
Reverse Opposite:
G T A C C G A T A C T G A T C G A G T C C G T A C T A G C G T A C T A G C G T A C G T A G T C A C T G A A T C G C G T A A C T G
p-value:1e-12
log p-value:-2.812e+01
Information Content per bp:1.828
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.9 +/- 26.1bp
Average Position of motif in Background53.7 +/- 13.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CWSYKTTCTYTGSCAG
NNTGTTTATTTTGGCA-
 A C G T A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:8
Orientation:reverse strand
Alignment:CWSYKTTCTYTGSCAG
--------CTTGGCAA
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CWSYKTTCTYTGSCAG---
TTTTTTTTTTTTTTCAGGTT
 A C G T A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CWSYKTTCTYTGSCAG---
TTTTTTTTTTTTTTCAGGTT
 A C G T A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CWSYKTTCTYTGSCAG
-----TTCTNMGGAA-
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G
A C G T A C G T A C G T A C G T A C G T C A G T G C A T A T G C G A C T C T A G T G C A C T A G C T A G G C T A C T G A A C G T

Stat6/MA0520.1/Jaspar

Match Rank:6
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CWSYKTTCTYTGSCAG--
---ANTTCTCAGGAANNN
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T C T G A A C G T A G C T A C G T G T A C G A C T A T G C G C T A C T A G C A T G C G T A C G T A T C G A G C A T T A C G

PB0137.1_Irf3_2/Jaspar

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CWSYKTTCTYTGSCAG
NNGCACCTTTCTCC-----
 A C G T A C G T A C G T A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:CWSYKTTCTYTGSCAG-
--------NTTGGCANN
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:9
Score:0.53
Offset:9
Orientation:forward strand
Alignment:CWSYKTTCTYTGSCAG-
---------TTGACAGC
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.52
Offset:9
Orientation:forward strand
Alignment:CWSYKTTCTYTGSCAG-
---------YTGWCADY
 A G T C C G A T A T G C A G C T A C G T A C G T A C G T A G T C A C G T G A T C C G A T A C T G A T G C A G T C C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C