Information for 12-CCCARAGKACAAR (Motif 9)

A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
Reverse Opposite:
G A T C A C G T A C G T A C T G A C G T G T A C A G T C A C G T A G C T A C G T A C T G A C T G A C T G
p-value:1e-13
log p-value:-3.021e+01
Information Content per bp:1.897
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.5 +/- 26.3bp
Average Position of motif in Background47.1 +/- 18.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CCCARAGKACAAR
--CAAAGGTCAG-
 A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CCCARAGKACAAR
CANAGNNCAAAGTCCA--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CCCARAGKACAAR
AGAGTCCAAAGTCCA--
 A C G T A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCCARAGKACAAR--
TCTCAAAGGTCACGAG
 A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCARAGKACAAR--
TCTCAAAGGTCACCTG
 A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCARAGKACAAR--
GGCAAAAGTCCAATAA
 A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCCARAGKACAAR
GTCCCCAGGGGA----
 A C G T A C G T A C G T A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
C A T G A C G T A G T C G A T C G A T C G A T C G C T A C T A G C T A G C T A G T C A G T C G A A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CCCARAGKACAAR--
--CAAAGGTCAAGGG
 A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G A C G T A C G T
A C G T A C G T G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CCCARAGKACAAR--
-----RNAACAATGG
 A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CCCARAGKACAAR
---TRAGGTCA--
 A G T C A G T C A G T C C G T A C T G A C G T A A C T G C A T G C G T A A G T C C G T A C G T A C T A G
A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T