Information for 8-GCGRGSCCTGCCG (Motif 6)

A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
Reverse Opposite:
A G T C A C T G A C T G A G T C C G T A A C T G A C T G A T C G A G T C A G C T G T A C A C T G A G T C
p-value:1e-15
log p-value:-3.658e+01
Information Content per bp:1.885
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.9 +/- 32.8bp
Average Position of motif in Background51.9 +/- 22.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zfx/MA0146.2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCGRGSCCTGCCG
GGGGCCGAGGCCTG---
 A C G T A C G T A C G T A C G T A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCGRGSCCTGCCG
-CTAGGCCT----
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCGRGSCCTGCCG
-CNAGGCCT----
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCGRGSCCTGCCG--
---GGCCCCGCCCCC
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G A C G T A C G T
A C G T A C G T A C G T T A C G C T A G A T G C G A T C G T A C A G T C C T A G A G T C A G T C A G T C G T A C A G T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCGRGSCCTGCCG---
-GGCCYCCTGCTGDGH
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G A C G T A C G T A C G T
A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GCGRGSCCTGCCG---
------CCTGCTGAGH
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCGRGSCCTGCCG
-SNGCACCTGCHS
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCGRGSCCTGCCG--
---CCCCCTGCTGTG
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G A C G T A C G T
A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

HES5/MA0821.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GCGRGSCCTGCCG
-CGGCACGTGCCA
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G
A C G T G A T C T C A G T C A G A G T C C T G A G A T C C T A G A G C T A C T G A G T C A G T C C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GCGRGSCCTGCCG-----
---TNTCCTGCTGTGNNG
 A C T G G T A C A C T G C T A G A C T G A T C G A G T C A G T C A C G T A C T G A G T C A G T C C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G