Information for 17-GCCACTCATCAGA (Motif 14)

A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
Reverse Opposite:
A C G T A G T C A C G T A C T G G T C A A G C T A C T G C G T A A C T G A G C T A C T G A C T G A G T C
p-value:1e-9
log p-value:-2.103e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 23.5bp
Average Position of motif in Background49.4 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCACTCATCAGA
AGCCACTCAAG---
 A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GCCACTCATCAGA
AASCACTCAA----
 A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCACTCATCAGA
SCTGTCAVTCAV----
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCCACTCATCAGA
MRSCACTYAA----
 A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCCACTCATCAGA
ACTAGCCAATCA-----
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCACTCATCAGA
NCTGTCAATCAN----
 A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCACTCATCAGA
RGGGCACTAACY---
 A C G T A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCACTCATCAGA
RSCACTYRAG---
 A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T

PB0114.1_Egr1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCCACTCATCAGA
NNAGTCCCACTCNNNN--
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
T G A C G A T C C G T A C T A G G C A T G T A C G A T C G A T C G T C A A G T C A G C T G A T C T A G C C T A G T G A C T G C A A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCCACTCATCAGA
NSCACTYVAV---
 A C T G A G T C A G T C C T G A A G T C A C G T A G T C C T G A A C G T A G T C G T C A C T A G C G T A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T