Information for 4-TGGACTTTGRACT (Motif 4)

C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T
Reverse Opposite:
C G T A C T A G C A G T A G T C G A T C G T C A T C G A G T C A A T C G A C G T T A G C G A T C G C T A
p-value:1e-19
log p-value:-4.605e+01
Information Content per bp:1.632
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.00%
Number of Background Sequences with motif498.3
Percentage of Background Sequences with motif1.07%
Average Position of motif in Targets50.5 +/- 24.3bp
Average Position of motif in Background50.1 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGRACT---
TGGACTTTGNNCTNTG
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGRACT--
TGGACTTTGNNCTCN
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--TGGACTTTGRACT-
ATTGGACTTTGACCCC
 A C G T A C G T C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TGGACTTTGRACT
NNATTGGACTTTNGNN-
 A C G T A C G T A C G T A C G T C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGACTTTGRACT
-TGACCTTGACCT
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T
A C G T G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGGACTTTGRACT
---CCTTTGATGT
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

RXRG/MA0856.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGRACT-
TGACCTTTGACCCC
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T
A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:8
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGACTTTGRACT
-TGACCTTGACCT
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T
A C G T G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T

Rxra/MA0512.2/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGRACT-
TGACCTTTGACCCC
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T
A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGGACTTTGRACT-
TGACCTTTGACCTC
 C G A T C T A G A T C G T G C A T A G C C A G T A G C T A C G T C A T G T C A G G T C A G A T C G C A T A C G T
G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C