Information for 5-TCAAAGGTCA (Motif 2)

A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
Reverse Opposite:
G C A T C A T G C G T A G A T C G A T C G A C T G C A T A C G T T A C G T C G A
p-value:1e-25
log p-value:-5.983e+01
Information Content per bp:1.653
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif15.20%
Number of Background Sequences with motif2326.1
Percentage of Background Sequences with motif5.00%
Average Position of motif in Targets50.5 +/- 25.1bp
Average Position of motif in Background50.2 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0053.1_Rara_1/Jaspar

Match Rank:1
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGGTCA----
TCTCAAAGGTCACCTG
 A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.91
Offset:1
Orientation:forward strand
Alignment:TCAAAGGTCA-
-CAAAGGTCAG
 A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGGTCA----
TCTCAAAGGTCACGAG
 A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A A C G T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nr2f6/MA0677.1/Jaspar

Match Rank:4
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:7
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.87
Offset:-2
Orientation:reverse strand
Alignment:--TCAAAGGTCA
ANGNAAAGGTCA
 A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGGTCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.84
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAGGTCA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T A C G T A C G T A C G T A G C T A T G C T G C A C G T A C T G A C T A G C T A G G C A T G T A C C G T A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C