Information for 3-GCAAATATTGACACTD (Motif 11)

A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
Reverse Opposite:
G A C T C G T A A C T G C A G T A T C G A C G T G T A C C G T A G T C A A G C T C G T A A C G T A G C T A C G T C A T G T G A C
p-value:1e-11
log p-value:-2.698e+01
Information Content per bp:1.708
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 25.7bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCAAATATTGACACTD
-CTAATATTGCTAAA-
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GCAAATATTGACACTD
-CTAATATTGCTAAA-
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:GCAAATATTGACACTD
----ATATTTACATA-
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T A C G T A C G T A C G T C G T A G A C T T C G A C G A T C G A T A C G T C T G A G A T C G C T A G A C T C G T A A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCAAATATTGACACTD
----ATATTTACATA-
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T A C G T A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T

PB0197.1_Zfp105_2/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCAAATATTGACACTD
NAAANTTATTGAANCAN
 A C G T A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
G A T C G T C A T C G A G T C A T C G A C G A T A G C T T C G A A C G T A C G T A C T G T C G A T G C A A G T C G T A C T C G A G A C T

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCAAATATTGACACTD
GGTTAAACATTAA-----
 A C G T A C G T A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
C T A G C T A G G C A T C G A T C T G A G T C A G C T A A T G C C G T A C A G T G A C T C G T A T G C A A C G T A C G T A C G T A C G T A C G T

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAAATATTGACACTD
NANTGGAAAAANTGAGTCAN
 A C G T A C G T A C G T A C G T A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
T A C G C T G A T C G A C G A T C T A G C T A G T C G A C T G A T C G A T C G A C G T A T C G A G C A T C A T G C G T A T A C G G C A T T G A C C G T A A G C T

MF0010.1_Homeobox_class/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCAAATATTGACACTD
--AATTATT-------
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAAATATTGACACTD
TTAATNATTAAC----
 A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
A C G T G A C T T C G A G T C A G C A T T A G C C G T A C A G T A G C T C G T A T G C A G A T C A C G T A C G T A C G T A C G T

HNF1A/MA0046.2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCAAATATTGACACTD
AGTTAATGATTAACT---
 A C G T A C G T A C T G G A T C C G T A C T G A C G T A G A C T C T G A C A G T C G A T A C T G C G T A A T G C G T C A T G A C G C A T C T G A
C T G A C T A G A G C T G C A T C T G A G T C A G C A T T A C G C G T A C A G T G A C T C G T A T C G A G T A C G C A T A C G T A C G T A C G T