Information for 7-AATCYTSCTTGCA (Motif 9)

C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
Reverse Opposite:
G A C T A C T G T G A C C G T A C T G A C T A G T A C G C G T A C T G A A T C G C G T A C G A T A C G T
p-value:1e-12
log p-value:-2.814e+01
Information Content per bp:1.735
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif40.8
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets51.8 +/- 24.8bp
Average Position of motif in Background47.3 +/- 23.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AATCYTSCTTGCA
CTAATCCTCTT----
 A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AATCYTSCTTGCA
AANTCATGCGTGAA
 A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AATCYTSCTTGCA
NYTAATCCYB------
 A C G T A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--AATCYTSCTTGCA
TTAATCCT-------
 A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--AATCYTSCTTGCA
YTAATCCY-------
 A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxo1/MA0480.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AATCYTSCTTGCA
--TCCTGTTTACA
 C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
A C G T A C G T C A G T A T G C A G T C A C G T A C T G A C G T A C G T A C G T G C T A A G T C G C T A

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.52
Offset:-7
Orientation:reverse strand
Alignment:-------AATCYTSCTTGCA
GNNAGCTAATCCCCCN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T A C G T A C G T A C G T

PH0125.1_Obox5_2/Jaspar

Match Rank:8
Score:0.50
Offset:-7
Orientation:forward strand
Alignment:-------AATCYTSCTTGCA
GATAATTAATCCCTCTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AATCYTSCTTGCA
GCTAATCC--------
 A C G T A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dmbx1/MA0883.1/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------AATCYTSCTTGCA
NNNATTAATCCGNTTNA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A T G C G A C T G A C T A T G C A G T C A G C T A C G T A C T G G T A C C G T A
G C A T C G A T T A G C T G C A G A C T C G A T C G T A C G T A A C G T A T G C A G T C A C T G C A T G G C A T G A C T G A T C C G T A A C G T A C G T