Information for 5-TCAAAGTCCA (Motif 2)

A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
Reverse Opposite:
C G A T C A T G C A T G G T C A T A G C G C A T G A C T A G C T T A C G T C G A
p-value:1e-26
log p-value:-6.067e+01
Information Content per bp:1.663
Number of Target Sequences with motif81.0
Percentage of Target Sequences with motif12.78%
Number of Background Sequences with motif1368.9
Percentage of Background Sequences with motif3.04%
Average Position of motif in Targets49.2 +/- 24.4bp
Average Position of motif in Background48.5 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA--
GGGGTCAAAGTCCAAT
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A A C G T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.87
Offset:-6
Orientation:forward strand
Alignment:------TCAAAGTCCA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.87
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAGTCCA
AGAGTCCAAAGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--TCAAAGTCCA----
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:TCAAAGTCCA-
-CAAAGGTCAG
 A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A A C G T
A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

RXRG/MA0856.1/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---TCAAAGTCCA
ACATCAAAGG---
 A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GGGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

Nr2f6/MA0677.1/Jaspar

Match Rank:10
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----TCAAAGTCCA
GAGGTCAAAGGTCA
 A C G T A C G T A C G T A C G T A C G T A T G C T C G A C T G A C G T A A T C G C A G T G T A C G T A C G C T A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A