Information for 9-CTGCCHTGCAGHCTCC (Motif 13)

A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
Reverse Opposite:
A C T G A T C G C G T A C T A G C G T A A G T C A C G T A T C G A G T C C G T A C T A G A C T G A C T G G T A C C G T A C T A G
p-value:1e-11
log p-value:-2.613e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets61.6 +/- 25.4bp
Average Position of motif in Background59.8 +/- 13.7bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CTGCCHTGCAGHCTCC
GTTGCCATGGNAAC---
 A C G T A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CTGCCHTGCAGHCTCC
AATCGCACTGCATTCCG-
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T

STAT3/MA0144.2/Jaspar

Match Rank:3
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGCCHTGCAGHCTCC
TTTCCCAGAAN-----
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
G A C T A C G T A C G T G A T C A G T C G T A C C T G A C T A G T G C A C G T A T C A G A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGCCHTGCAGHCTCC
CTGCCCGCA-------
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGCCHTGCAGHCTCC
TTGCCATGGCAACN--
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CTGCCHTGCAGHCTCC----
-TGACCTAAAGTAACCTCTG
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C A C G T A C G T A C G T A C G T
A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTGCCHTGCAGHCTCC
-TGCCCTGAGGGCA--
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--CTGCCHTGCAGHCTCC
KGTTGCCATGGCAAC---
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTGCCHTGCAGHCTCC-
-TGACCTNTAGTAACCC
 A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C A C G T
A C G T G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:10
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CTGCCHTGCAGHCTCC
NNCTTCCNGGAAGN----
 A C G T A C G T A G T C A C G T A C T G A G T C A G T C G A C T A C G T A C T G A T G C C G T A A C T G G A C T A G T C A C G T A T G C G T A C
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C A C G T A C G T A C G T A C G T