Information for 25-GAGAAATAACATTGCY (Motif 46)

T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
Reverse Opposite:
C T A G A C T G A G T C C G T A C G T A C G A T A C T G A C G T A C G T C G T A C G A T A C G T A C G T A G T C A C G T A G T C
p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.900
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.8 +/- 16.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox1/MA0870.1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGAAATAACATTGCY
-AACAATAACATTGTT
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGAAATAACATTGCY
-AAAAATAACAAACGG
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAGAAATAACATTGCY
-AGAAATGACTTCCCT
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGAAATAACATTGCY
--AAACAAACATTC--
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T

SOX21/MA0866.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGAAATAACATTGCY
-AACACTACCATTGTT
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T T C G A G T C A G A T C G C T A G T A C A G C T C T G A G T A C G T A C G T C A A G C T A G C T T A C G A G C T G A C T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGAAATAACATTGCY
DCYAAAAATAGM------
 A C G T A C G T T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGAAATAACATTGCY
AACAAACAACAAGAG-
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GAGAAATAACATTGCY---
-----CTAATATTGCTAAA
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:9
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GAGAAATAACATTGCY---
-----CTAATATTGCTAAA
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGAAATAACATTGCY
--AAGATATCCTT---
 T A C G C G T A A C T G C G T A C G T A C G T A A C G T C G T A C G T A A G T C C G T A A C G T A C G T A C T G A G T C A G C T
A C G T A C G T G C T A G C T A T C A G C G T A A C G T C T G A C G A T A T G C G A T C G C A T A G C T A C G T A C G T A C G T