Information for 12-TCGTTAAGTG (Motif 43)

A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G
Reverse Opposite:
A G T C C G T A A G T C A C G T A C G T C G T A C G T A A G T C A C T G C G T A
p-value:1e-6
log p-value:-1.417e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 21.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTAAGTG------
NTNNTTAAGTGGNTNAN
 A C G T A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0004.1_Nkx3-2/Jaspar

Match Rank:2
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TCGTTAAGTG------
NTNNTTAAGTGGTTANN
 A C G T A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:TCGTTAAGTG--
---TTAAGTGGN
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:TCGTTAAGTG--
---TTAAGTGGT
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

ISL2/MA0914.1/Jaspar

Match Rank:5
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:TCGTTAAGTG-
---TTAAGTGC
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TCGTTAAGTG--
--NTCAAGTGGN
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.71
Offset:2
Orientation:forward strand
Alignment:TCGTTAAGTG--
--BTBRAGTGSN
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T
A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TCGTTAAGTG---
---TTRAGTGSYK
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TCGTTAAGTG-
--NTCAAGTGG
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G A C G T
A C G T A C G T A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G

Nkx2-5/MA0063.1/Jaspar

Match Rank:10
Score:0.71
Offset:3
Orientation:forward strand
Alignment:TCGTTAAGTG
---TTAATTG
 A C G T A G T C A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C T G
A C G T A C G T A C G T C G A T A G C T C G T A C G T A A C G T G C A T C A T G