Information for 20-CWCMAGYASAVGT (Motif 40)

A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
Reverse Opposite:
T G C A A G T C A T G C A G C T A T G C C A G T C T A G A G T C A G C T C A G T A T C G C G T A C T A G
p-value:1e-6
log p-value:-1.611e+01
Information Content per bp:1.546
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif9.03%
Number of Background Sequences with motif2234.1
Percentage of Background Sequences with motif4.62%
Average Position of motif in Targets50.1 +/- 25.4bp
Average Position of motif in Background49.8 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CWCMAGYASAVGT
BTCAAGGTCA---
 A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CWCMAGYASAVGT
-CCAGGAACAG--
 A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CWCMAGYASAVGT
NTCAAGGTCA---
 A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CWCMAGYASAVGT
--CAAGGHCANV-
 A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:5
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CWCMAGYASAVGT
AAGTTCAAGGTCAGC-
 A C G T A C G T A C G T A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CWCMAGYASAVGT
SNGCACCTGCHS----
 A C G T A C G T A C G T A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CWCMAGYASAVGT
TBGCACGCAA----
 A C G T A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CWCMAGYASAVGT
CGCCTCAGGCA-----
 A C G T A C G T A C G T A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CWCMAGYASAVGT
-TCAAGGTCAN--
 A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CWCMAGYASAVGT
AGCCACTCAAG-------
 A C G T A C G T A C G T A C G T A C G T A G T C G C A T A T G C G T C A T C G A A C T G G A T C G T C A T A C G T C G A T A C G T C A G A C G T
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T