Information for 18-AAWGTCATATGCA (Motif 38)

C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A
Reverse Opposite:
A C G T A C T G A T G C C T G A A G C T C T G A C G A T T A C G G T C A A G T C C G T A A C G T A G C T
p-value:1e-7
log p-value:-1.726e+01
Information Content per bp:1.711
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif54.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets56.3 +/- 18.8bp
Average Position of motif in Background53.3 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAWGTCATATGCA------
--TNNATTATGCATANNTT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAWGTCATATGCA-
----GHATATKCAT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T
A C G T A C G T A C G T A C G T C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AAWGTCATATGCA---
---TTCATTTGCATAT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:AAWGTCATATGCA---
------ATATGCAAAT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:AAWGTCATATGCA---
------TTATGCAAAT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

PB0014.1_Esrra_1/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AAWGTCATATGCA
TATTCAAGGTCATGCGA-
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-AAWGTCATATGCA-
NNATNTGATANNNNN
 A C G T C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T
G T C A C T G A G C T A A G C T G C A T G A C T A T C G T C G A A G C T T C G A A G T C A T C G A C T G C A T G C A G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AAWGTCATATGCA---
NNNNTTGTGTGCTTNN
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T
A G C T C G T A C G A T C A G T C A G T C G A T C T A G A G C T A C T G C G A T A C T G A G T C A G C T C G A T A T G C C A T G

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:AAWGTCATATGCA---
-CTTTGTTATGCAAAT
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T
A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Pou2f3/MA0627.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:AAWGTCATATGCA-----
--TNTAATTTGCATACNA
 C T G A C G T A G C A T A C T G A C G T A G T C C G T A A G C T C T G A A G C T A T C G G T A C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C C A G T T G C A G C T A C G A T G C A T C G A T C T A G G T A C C T G A C G A T C T G A G T A C C G T A T C G A