Information for 12-TCCTGTCCTCTGC (Motif 28)

G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
Reverse Opposite:
C A T G A T G C C G T A A T C G C G T A C T A G A C T G C G T A T G A C C G T A T C A G C T A G C G T A
p-value:1e-9
log p-value:-2.170e+01
Information Content per bp:1.712
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.29%
Number of Background Sequences with motif161.6
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets43.1 +/- 21.1bp
Average Position of motif in Background50.1 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC
--CTGACCTTTG-
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC
---TGACCTYA--
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC----
---TGACCTTTGCCCTA
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TCCTGTCCTCTGC----
---TGACCTTTGCCCCA
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC-----
---TGACCTTTGCCCTAN
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCCTGTCCTCTGC
WCATTTTGKCCTCYT-
 A C G T A C G T A C G T G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
C G T A G A T C C T G A A C G T A C G T A C G T C A G T C T A G A C G T G T A C G T A C G A C T A G T C G A T C A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC
----TTCCTCT--
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCCTGTCCTCTGC
CNNTTGACCTTTG-
 A C G T G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TCCTGTCCTCTGC
---TGACCYCT--
 G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
A C G T A C G T A C G T A G C T T C A G T G C A G T A C T G A C A G C T A G T C A G C T A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---TCCTGTCCTCTGC
ACTTCCTGTT------
 A C G T A C G T A C G T G A C T A G T C A G T C G C A T A C T G A C G T T A G C A G T C A C G T T A G C G C A T T A C G G T A C
T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T