Information for 1-CKCCACCTGGTGG (Motif 2)

A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
Reverse Opposite:
G T A C A G T C C G T A A T G C G A T C C T G A A T C G T C A G C A G T A C T G A T C G G T A C T C A G
p-value:1e-17
log p-value:-4.063e+01
Information Content per bp:1.666
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif4.71%
Number of Background Sequences with motif356.4
Percentage of Background Sequences with motif0.74%
Average Position of motif in Targets49.2 +/- 25.9bp
Average Position of motif in Background50.7 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.86
Offset:-3
Orientation:reverse strand
Alignment:---CKCCACCTGGTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.85
Offset:-6
Orientation:forward strand
Alignment:------CKCCACCTGGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.85
Offset:-4
Orientation:forward strand
Alignment:----CKCCACCTGGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

FIGLA/MA0820.1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CKCCACCTGGTGG
-ACCACCTGTT--
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CKCCACCTGGTGG
---CACGTGNT--
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T A C G T A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T

MAX::MYC/MA0059.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CKCCACCTGGTGG
-ACCACGTGCTC-
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T C T G A A G T C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A G C T G A T C A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CKCCACCTGGTGG
-NNCACCTGNN--
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CKCCACCTGGTGG
SNGCACCTGCHS-
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CKCCACCTGGTGG
-GCCATCTGTT--
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CKCCACCTGGTGG
--CCACGTGGNN-
 A G T C C A T G A T G C A G T C G T C A A G T C T A G C G A C T C T A G A T C G C G A T T C A G C A T G
A C G T A C G T T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A G C T A T G C A C G T