Information for 1-CCTAGAGTCCGTCACA (Motif 1)

A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
Reverse Opposite:
A C G T A C T G C G A T C T A G C G T A T G A C A C T G C A T G C G T A A G T C C G A T A G T C G A C T T G C A C A T G A C T G
p-value:1e-21
log p-value:-4.946e+01
Information Content per bp:1.714
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.5 +/- 22.1bp
Average Position of motif in Background76.1 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CCTAGAGTCCGTCACA
NNNACCGAGAGTNNN-----
 A C G T A C G T A C G T A C G T A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CCTAGAGTCCGTCACA
GNNACCGAGAATNNN-----
 A C G T A C G T A C G T A C G T A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T A C G T A C G T A C G T A C G T A C G T

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:3
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTAGAGTCCGTCACA
ACTCCAAGTACTTGGAA
 A C G T A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
T C G A G T A C C G A T A T G C T A G C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A C T G T C A G T G C A G T C A

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTAGAGTCCGTCACA
CTTTAAGTACTTAATG
 A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
G A T C A G C T A G C T G C A T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T T C G A C T G A G A C T C T A G

PH0116.1_Nkx2-9/Jaspar

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CCTAGAGTCCGTCACA
NATTTAAGTACTTNAAA
 A C G T A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
C T G A G C T A C G A T G C A T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T G C T A C G T A C T G A G C T A

PB0094.1_Zfp128_1/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CCTAGAGTCCGTCACA--
-TTNGGGTACGCCNNANN
 A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A A C G T A C G T
A C G T G A C T C A G T C T G A T C A G A T C G A C T G A C G T C G T A A G T C C T A G G A T C G T A C G T C A G T C A C G T A C T A G T G C A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CCTAGAGTCCGTCACA-
-----TGTCTGDCACCT
 A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CCTAGAGTCCGTCACA
-------TACGTCAT-
 A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:9
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCTAGAGTCCGTCACA
GGCAAAAGTCCAATAA-
 A C G T A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CCTAGAGTCCGTCACA
--TTAAGTGCTT----
 A G T C G A T C A C G T C T G A C T A G C G T A A C T G C G A T G T A C G T A C A C T G C G A T A G T C C G T A G T A C G T C A
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T